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Science hasn't been able to completely support theories about life's origins and
early evolution for two reasons: 1. It is impossible to observe emergence of life in conditions
of existing life 2. The time periods that would allow the process to take place cannot be
replicated. What follows, is a recap of those theories along with some discussion of a couple of moments that are very crucial to the whole sequence of events. The quick links on the left are an outline of how this topic is organized. |
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What is the "Selfish Gene" theory? |
Somewhat linked to the mystery of life's origin, is the idea of the "Selfish Gene." While it doesn't directly point to how life evolved, it gives an explanation of it's purpose and nature. It is interesting to see life through a different angle in a scenario that finds a great deal of scientific support. |
The birth of matter
Well, the real beginning was between 11 and 15 billion years ago. That's where physics
and biology first meet, as radiation started giving rise to matter 1 microsecond after time was born from
singularity. Gamma rays had enough energy for pair production (particle-antiparticle), but only
for that microsecond to produce all protons and neutrons of today, and for one second to produce
the electrons that everything is made out of. The 1st question in the "history of life" (have you
seen someone address it at an earlier stage?) is why didn't annihilation which was occurring all along
(until today) did not result in about the same loss of particles as were produced (net production = 0).
Why was there net pair production rather than annihilation?
Because of its complexity I will actually leave this question for the physicists, but the theoretical answer has to do with mesons, a type of elementary particle (consisting of even number of quarks and
antiquarks).
After protons/antiprotons and neutrons/antineutrons in
the first microsecond, and electrons/positrons along with many other pairs in the first second,
all ingredients for life were already made. The ways in which they would combine to
form everything we know, including life, are incredible.
Matter as we know it, however, came about 300 000 years after the first second. That's when the temperature of the universe became low enough for atoms not to be ripped apart by high energy radiation and collisions. The density of radiation was falling faster than that of matter, and atoms could combine steadily for the first time. Once this happened, radiation could no longer be absorbed or scattered as soon as it was produced and now it could travel through space with almost complete freedom. That signalled the universe's transition from opaque (impenetrable by light) to transparent. Matter had started its journey through time.
The Solar nebula & Earth's formation
Some of that matter would come to spiral in the arms of a galaxy we call the Milky Way, 30 000 light years away from its center. After passing through the core of an exploded supernova, our future bodies became part of the solar nebula. As temperatures in it started to decrease, solid particles condensed and formed "planetesimals" (grains of condensed material from mm to km in size). Gentle collisions started bringing them together, and as a mass grew, so did its gravitational force. Literature tells us that only in a few tens of thousands of years kilometer sized bodies grew through collisions to produce a few bodies 1000 km or more in diameter. Formation of all major bodies in the solar system was complete in this way by 4.6 billion years ago. The final development for the terrestrial planets was to reach their final sizes by sweeping up the rest of the planetesimals. That sweeping up continued until 3.8 billion years ago in the form of "heavy bombardment" of the planet's surfaces with all planetesimals (which on falling on Earth would be called meteorites), in close orbit.
A rendering of the Solar nebula by artist W. Hartmann.
Early Earth and the emergence of life
We've finally come to the point in time when the Earth has formed (4.5 billion years ago), and its crust has started to cool and it's ready to solidify. That takes less than 500 000 000 years to about 4.2 billion years ago. Now I want to come back to a very key number from the previous paragraph: 3.8 billion of years ago - that is the time when the "heavy bombardment" of solar nebula debris decreased substantially. That is also the age at which the earliest evidence of life is dated! Take a look at the timeline below. From its formation, through the time its crust becomes solid, plus another 200 million years, the Earth is constantly bombarded with meteroites. And assuming the widely accepted "Giant Impact" theory of the origin of the Moon there was a huge impact between the Earth and a body 1-3 times the mass of Mars in the Earth's early days. Imagine the conditions that gave rise to life! Here is a summary of the article that announces evidence of life forms 3.85 billion years ago. It was published in 1996. I've said "evidence" rather than "proof" because instead of a fossil record the researchers have worked with isotopic data. Assuming that their results are realistic, here is where the 2nd question that I want to address comes. It is only natural to be sure that we will never find the earliest, the first life forms. Therefore, if life arose spontaneously on Earth, it had much less than 650 000 000 years to do so in the most hectic conditions imaginable. In fact, because we've almost certainly founnd later life because the chances of looking at the very first signs of life are practically zero, life probably started to evolve meanwhile the crust was still not solid. I interpret that to mean that there were little or no large bodies of water at that time. Of course there surely was condensation of water, but not in large amounts, and not for a considerable amount of time. If we assume that large bodies of water that are relatively permanent were necessary for the emergence of life we are only left with 400 000 000 years between the time the crust solidifyied and the earliest evidence of life. That is only 100 times longer than the time it took for humans to evolve from their closest primate ancestors. And remember that that number is certainly smaller. And even during that time collisions with planetesimals would have evaporated huge amounts of any body of water. To me that's the second critical point -- obviously the time from crust solidification to earliest evidence of life does not seem long enough to allow for emergence of life -- therefore life did probably arise meanwhile the crust was still not solid and meanwhile Earth was still in the period of "heavy bombardment".
The earliest fossil record of life dates to 3.5 billion years ago. It is found in stromatolites, which are layers of sediment produced by cyanobacteria (blue-green algae). Cyanobacteria are photosynthetic organisms. Yes, that itself speaks of an advanced life form. So, by 3.5 billion years ago life had evolved in considerable complexity. No need to repeat all arguments that first life came about extremely early.
The bottom line is that evidence points that life evolved before Earth was 650 000 000 years old (4.5 to 3.85 billion year interval) under constantly changing, violent conditions.
So how was that possible? Life seems to be nearly as old as the planet itself. What caused matter to undertake such a pathway so quickly in the first place?

Abiotic synthesis of organic compounds, the theory
Earth lost its primeval atmosphere during the "heavy bombardment" stage possibly
as a result of the numerous violent collisions. The secondary (present) atmosphere was entirely developed from gas
released from the interior during volcanic eruptions or from gas released from icy bodies (ice chunks about the size of a
house)
on impact with Earth. The gasses emerging from the interior of the Earth were H2,
H2O, CO2, N2, some CO, CH4 and
NH3.
Hydrogen, because of its light weight had the ability to exceed 1/6 of Earth's escape velocity and if a particle
can exceed that number (11.2/6=1.9 km/s) it will lost to space. Water condensed as rain and formed the oceans. Nearly all of the
outgassed CO2 was dissolved in the oceans and later became part of carbonate rocks such as limestone.
Thus the early secondary atmosphere was mainly N2 with small amounts of H2O vapor
and CO2.
Now some chemistry (oh no). It is said that the most important characteristic of that early
atmosphere is the absence of O2, a very strong oxidizing agent. That means that O2,
as an electron acceptor, tends to break organic bonds. In its absence, a reducing environment, where electron donors were prevalent,
simple
organic molecules (monomers - "single units") could form spontaneously. The energy for their synthesis was provided
by lightning, radioactive decay, volcanic activity or the Sun's radiation, which was very intense due to the thin
atmosphere and absence of ozone (it should be noted that young suns emit more UV radiation).
In the lab, mimicing the ancient conditions has yielded all 20 amino acids, several carbohydrates, lipids,
the bases of RNA and DNA, and ATP, the energy molecule (with the addition of phosphate).
The next step is to form polymers from the monomers. For example, proteins are polymers and they are made of chains of amino acids, which are monomers. For that to happen, however, enzymes, or catalysts are needed to make the new bonds. Well, there were no enzymes 4 billion years ago. How did polymerization happen? With the help of metal ions on the surface of rocks and especially clay. Polymerization takes place by dehydration reactions - removal of a hydrogen from one monomer and of a hydroxyl group of the other, yielding a water molecule. Lab experiments have succeeded when hot rock or clay (even cool clay) are used. They vaporize water and concentrate the monomers and a polymer is formed. Proteinoids is the name given to proteins synthesized in this fashion. My biology book makes the following statement: "Perhaps waves or rain splashed dilute solutions of organic monomers onto fresh lava or other hot rocks and then rinsed protenoids and polymers back into the water". Besides clay, iron pyrite (Fe and S) has also been proposed to have served as catalyst. The key feature of both compounds is a charged surface that can concentrate amino acids and other monomers so that they are brought closer together. Then metal ions, such as Fe and Zn, function as catalysts and polymers are formed.
Today, Iron pyrite, FeS2,
is known as "Fool's Gold", because it is easily mistaken for gold.When mixed with cool water proteinoids self-assemble into tiny droplets called microspheres. When lipids (fats) are added to the solution, liposomes form, with the lipids forming a bi-layer on the surface of the proteins. Those familiar with biology know that the animal cell is separated from the outside namely with a lipid bi-layer. It is the property of fats to arrange so that only their polar heads are in contact with the polar water. The nonpolar tails are unexposed to water.
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The lipid bilayer which can enclose proteins as in the case of the liposome and the whole cell as in the case of the animal cell. Notice how the nonpolar tails are never exposed to polar surroundings (water). |
In the case that polypeptides (polymers of proteins), nucleic acids (RNA), and polysaccharides (polymers of glucose or other sugars) are added to the solution, they become enclosed within the lipid bilayer and a coacervate, is formed.
Microspheres, liposomes and coarcervates are collectively called protobionts (aggregates of abiotically produced molecules).
Protobionts resemble cells in that they contain a protected by a lipid bilayer inner environment, and perform chemical reactions. They undergo osmotic swelling or shrinking when placed in different salt concentrations, they can store energy in the form of membrane potential, a voltage across the surface, which can be discharged in nervelike fashion (such excitability is characteristic of all life). Two main things are lacking at this point: enzymes (to make unfavorable chemical reactions such as metabolism possible) and hereditary material. Protobionts can reproduce to a certain extent: when they grow too large they split in half. That, however, dilutes the contents of the cell, and there is no way of perpetuating a certain successfull for survival combination of molecular aggregates.
The RNA world
As noted in the first paragraph of this section, RNA chains form spontaneously in solutions mimicking the conditions
on the primitive Earth. What is really the next turning point in the story of "life" is the observation that RNA can be
self-replicating. In today's experiments, RNA sequences of about 5 to 10 nucleotides are copied from the original
strand. If zinc is added as a catalyst, sequences up to 40 nucleotides long are copied with less than 1% error. The theory
holds that RNA was capable of replicating with the same, or better success on the primeval Earth. Another very important
discovery of the last years was that RNA possesses catalytic activity. Modern cells use RNA catalysts called "ribozymes", a
fact that disproved the long-held view that only proteins (enzymes) serve as biological catalysts. The fact that RNA is
autocatalytic strengthens the theory that RNA molecules were fully capable of self-replication (RNA autocatalyzes its
replication)!
Thus, we have replicating autocatalytic RNA molecules and they were subjected to natural selection the same
way that every population of future species would be. Unlike double-stranded DNA, which takes the form of a uniform helix,
the single stranded RNA assumes a variety of 3D shapes determined by the nucleotide sequence: each sequence folds in a
unique conformation and in this way, it has a variable chance of survival in the changing conditions. Also, the RNA molecule
having the greatest autocatalytic activity will leave more copies of itself. Meanwhile, occasionally a mutation (a copying
error) occurs, and that results in a molecule that folds into a shape even more stable or adept at self-replication than
the ancestral sequence.
The next turning point in the origin of life would come when RNA would start serving as the template which would
direct protein syntesis, a function that today is performed by DNA, and THE function for which nucleic acids are known for
(besides the newly discovered catalytic function of RNA). It is not too clear how that occured, but it is thought that
"molecular cooperation" was involved:
RNA molecules probably served as simple templates holding a few amino acids together long enough for them to be linked.
If RNA happened to synthesize a short amino acid chain (polypeptide/protein) that in turn behaved as an enzyme helping the
RNA molecule to replicate, then that would be the earliest case of "molecular cooperation" and it would be of huge
importance to the future of life.
This step could have been taken even before RNA and polypeptides became packaged within membranes. The protection of the
lipid bilayer was soon needed though, because it was the only way of taking advantage of the situation of "molecular
cooperation": if an RNA molecule ordered amino acids into a primitive enzyme that extracted energy from an organic fuel
and made that energy available for other reactions within the protobiont, particularly
replication of RNA, natural selection would favor keeping all components
close-by, because the energy would otherwise be lost to the surroundings.
Life is ready to evolve
We have followed a scenario that brings us to a structure with the fundamental properties of today's cells. It is capable of accumulating monomers from its surroundings that are made into polymers thanks to enzymes that are programmed by genes. This protobiont grows and splits, distributing copies of its genes to offspring. Even if only one such protobiont arose initially by the abiotic processes described so far, its descendants would vary because of mutations (errors in the copying of RNA). Therefore, natural selection (Darwinian evolution) would be possible in its true sense: varying individuals would have differential reproductive success. In this way many refinements to primitive metabolism and inheritance could be made. One such change led to DNA becoming the hereditary material. Initially, RNA could have provided the template on which DNA nucleotides were assembled. Once DNA appeared it took over its present role from RNA because of its more stable backbone structure and the fact that it spontaneously forms a compact double-stranded helix.
Before concluding this topic we should mention the theory of panspermia, which holds that the hundreds of
thousands of meteorites and comets hitting the early Earth brought with them organic monomers formed by abiotic reactions
in outer space. Extraterrestrial organic compounds, including amino acids have been found in modern meteorites and in 1994,
scientists found evidence for the amino acid glycine in the spectrum of light emitted from a distant star-forming region.
Nevertheless, this has not been a definite discovery.
References:
Campbell, N. A. 1996. Biology, 4th ed. The Benjamin/Cummings Publishing Company, Inc., pp. 486-497.
Fix, J. D. 1999. Astronomy, Journey to the Cosmic Frontier, 2nd ed. WCB/McGraw-Hill. pp. 125, 166, 423.
Pallin, D. J., Wright, J. 2000. MCAT Biology . Princeton Review Management, L.L.C. pp. 126, 185-186.
What is the "Selfish Gene" theory?
The following is all my interpretation and it might not represent the exact views on these subjects.
In short, the "Selfish Gene" theory says that genes (the nucleic acids RNA, DNA) are using "living things"
to propagate. It turns the percepted view of "life" "using" DNA/RNA for its purpose around, and states that
genes are using "life" for protection and survival.
Each and every living thing on Earth, from bacteria to humans exists with the utmost mission to reproduce.
Its actions throughout its existance are guided mainly towards this goal. If it is achieved, after the
organism's death the only thing that survives in time are the genes. The organisms are transient compared
to the genes, which maintain a relatively unchanged state.
Isn't life a method of genes to protect, reproduce and spread themselves?
Isn't evolution about DNA finding more and better ways to do those 3 things?
Where is the support for the "Selfish Gene" theory?
As we will see, support might not be too hard to find. That is not to say that there is a way to prove this theory.
It is rather a speculation than a theory, but one that deserves our attention.
Let's start to look for evidence in the dawn of life, in the events discussed above.
It serves well to ask to question: What is life? There is NO definite answer to that question. Science has not
drawn a line between living and non-living, the classic example being the virus. Nevertheless, there are certain
features that every candidate for the "alive" title needs to have. One of them is the ability to reproduce.
We are not talking, however, of the primitive protobionts that could grow up to a certain size and then split. Without
hereditary material their contents is diluted and they are like the drop of water that splits in two as it grows when
its surface tension breaks. That is NOT life. Life is defined as having the ability to make a progeny almost identical
to the parent, in asexual reproduction, and sharing to a certain degree attributes from both parents in sexual reproduction.
Obviously asexual reproduction preceded sexual reproduction with billions of years. How was it started? Where and how did
this crucial property of life FIRST appear?
In RNA. As stated above, RNA was the first organic compound capable of self-replication. I believe that to be critical to
further discussions since this is one of life's most important properties. Replication, or reproduction in the sense
of life were first inherent only to RNA. Consider this statement given as an alternative hypothesis to the evolution of
life in MCAT Biology, 2000 (see reference above): "Life began with self-replicating RNA floating free in the ocean.
As it grew more complex, this early genome would require protection". We can consider, therefore, the primitive protobiont and
the early RNA as two separate entities, until the moment when RNA incorporated itself within the lipid bilayer for its
protection. Of course, here we can bring up the opposite theory: that the protobiont used the RNA for its own purposes as well.
The truth however is that ONLY RNA had the most important attribute of life: replication. The protobiont exhibited chemical
similarity to life, but these are not even close to being primary in what characterizes life. It does indeed seem that
RNA utilized the primitive protobiont for its own purpose of replication. Moreover, replication was the inherent property of
RNA before incorporation in protobionts, while growing and splitting (protobionts) seems more like a physical consequence
rather than something else. Nevetheless after the incorporation, the new entity, protobiont with RNA, begins performing
reproduction the way RNA dictates in that an almost exact copy of the strand is produced along with the same level of
defense (the protobiont, or today's cell). And indeed, we can look at the problem as if nothing has changed since that
ancient time. RNA ensures that its new copy is protected the same way as its parent, a result from the fact that RNA and later
DNA have come to hold the information from which their protective environment is constructed.
Afterall, RNA-directed protein synthesis originated as RNA synthesized a polypeptide that behaved as an enzyme helping the RNA
molecule to replicate (see above)!
Another important moment from the early Earth is the fact that RNA was one of the few (some amino acids have shown weak enzymatic properties) compounds capable of catalyzing unfavorable reactions. That marked the first organic compound to be able to facilitate biological reactions (clay, iron pyrite are inorganic catalysts). Note that it first catalyzed not any biological reactions, but its self-replication.
Why was DNA preceded by RNA? As mentioned above, unlike DNA, each RNA sequence folds in a unique conformation and in this way, it has a variable chance of survival in the changing conditions. That was necessary to ensure early survival by natural selection, because the more stable and more capable of replication and catalyzation strands would survive longer before eventually finding protection in the form of the protobiont (cell). Once settled in that environment, RNA as a repository of genetic information, could be replaced by the much more stable double-stranded DNA.
The theory of the "selfish gene" can be made consistent with "natural selection". We can simply switch the roles of "species having different reproductive success due to different gene order" to "genes ensuring their long-term survival via maintaining a pool of different sequences that code for their hosts". Thus, if a gene was replicated exactly the same way every time (no mutations-no natural selection), its host would be vulnerable to extinction at a change of environmental conditions. By ensuring code errors at replication (mutations), the genes are diversifying their hosts so that at a change of environment, some would be more adaptive than others and survive the stress. Indeed that's what the mainstream natural selection theory holds - over time mutations give rise to individuals that might be more resistant to some factor (climate change, disease). Thus, if the factor begins to play a role in the population the individuals that have become more tolerant of it will survive in the new conditions, and maybe give rise to a new species due to genetic drift (small sample of a population is not likely to be gentically representative of the original population). However -- what survives is not the old population, which goes down in history, but its genes (which of course are modified to include the change in towards the new factor; nevertheless, this is an insignificant change. As it is known mice and human DNA are nearly identical...).
Some possible implications
A very crucial observation is the fact that between 90% and 95% of DNA has an unknown function.
Actually, it has been believed that these regions have no function at all, and that is why they have often been called
"junk DNA". Recent studies, however, have found evidence for otherwise. Many studies have reported that these regions
might contain regulatory sequences for protein expression (or simply said, regulation of what proteins should be made by
the cell). Another study stands out in that it likens the nucleotide sequences in "junk DNA" to "language"
(Flam, F. "Hints of a language in junk DNA", Science 266:1320, 1994). The authors
employed linguistic tests to analyze junk DNA and discovered striking similarities to ordinary language.
The scientists interpret those similarities as suggestions that there might be messages in the junk sequences,
although its anyone's guess as to how the language might work. An existance of such a "language" is indeed a very
exciting theory. Really, what is the real purpose of such a huge amount of genetic information? A key feature of biological
organisms is optimal energy expenditure and to carry enormous amounts of unnecessary molecules is contrary to this fundamental
energy saving feature. The final connection At the end of all the questions without answers there is one more left to ask. It is bigger than all the rest that
we have seen so far, because it deals with the two fundamental domains of creation -- the living and non-living. There is, however, one line among which there is a striking similarity among
the two and it deals with the level
of understanding that contemporary science has of both DNA and the physical universe.
It is known that most DNA mutations occur within the "junk sequences". That rules out a speculation that DNA carries a
permanent piece of information, such as some definite sequence like a "message".
Nevetheless the assumption can be made that DNA is using its hosts
in order to pass along that sequence . We do not know what 90% to 95% of life's genetic material is for.
All we know is that 5-10% code for synthesis of what we call life, or what DNA might call
its protection shell, if we can dare to call life in this way.
If that is the case, we can only speculate what is the purpose of this mysterious DNA in the long run. We should only
know that only with 5-10% the information storage is immense, and therefore 19-20 times more information
can hold any type of surprises. For example, if this region were to be turned on, and its genes translated into proteins,
there would be a HUGE amount of products (with what function?). Is there an evolution on DNA that will make those regions
active in some way?
As mentioned in the previous paragraph, most frequent mutations occur within the "junk DNA" region (and based on that humans
can be DNA "fingerprinted"). Can we assume that since mutations in the 5-10% region serve to ensure DNA's survival through
changing conditions, mutations in the "non-coding" region serve an even more important purpose? Or if not now, can gradual
accumulations of mutations lead to a certain situation in the future when an "on" switch reads the language, performing a
purpose (not necessary of protein synthesis)?
We are talking about DNA (which codes for what we call "life") and the incomparably more immense realm of physical
matter that obeys today's physics laws. These two coexisting entities can clearly be separated on the basis of living
and non-living.
For DNA and the physical world, the unknown 90-95% are respectively "junk DNA" and dark matter.
Apart from speaking of the true level of understanding of our world,
these numbers catch our attention in their similarity.
I leave for you to ponder on any relationships between the origin of life, DNA, and the
universe.

"Origin of Life" section accuracy guaranteed. "Selfish Gene" section presents my views on the subject. Ivan Kirov B.S., 2002.